This is a list of ontologies that are part of the OBO Foundry
OBO Foundry ontologies TitlePrefixDescriptionOfficial page Agronomy Ontology AGRO Ontology of concepts relevant to agronomy experiments. An ontology of core ecological entitiesECOCORE An ontology for ecological entities. Anatomical Entity OntologyAEO Ontology of anatomical structures that expand CARO, the Common Anatomy Reference Ontology. Antibiotic Resistance OntologyARO Ontology for antibiotic resistance genes and mutations. Apollo Structured Vocabulary APOLLO-SV Ontology for enabling interoperability of epidemic models and public health application software. Ascomycete phenotype ontologyAPO A structured controlled vocabulary for the phenotypes of Ascomycete fungi. Basic Formal OntologyBFO The upper-level ontology upon which OBO Foundry ontologies are built. Beta Cell Genomics OntologyBCGO An application ontology built for beta cell genomic studies. Biological Collections Ontology BCO An ontology for biodiversity data. Biological Imaging Methods Ontology FBBI Ontology for methods involved in biomedical imaging, including preparation and acquisition. Biological Spatial OntologyBSPO An ontology for representing spatial concepts used in biology. BRENDA tissue / enzyme sourceBTO An ontology for the source of enzymes. C. elegans development ontology (see WormBase)WBLS An ontology for the development of Caenorhabditis elegans. C. elegans Gross Anatomy Ontology (see WormBase)WBBT An ontology for the anatomy of Caenorhabditis elegans. C. elegans phenotype (see WormBase)WBPHENOTYPE An ontology for the phenotypes of Caenorhabditis elegans. Cardiovascular Disease OntologyCVDO An ontology for concepts related to cardiovascular diseases. Cell Line Ontology CLO Ontology to describe cell lines. Cell Ontology CL Ontology for metazoan cell types. Chemical Entities of Biological InterestCHEBI Ontology of small molecular entities of biological interest. Chemical Information Ontology CHEMINF Ontology for descriptors used in chemoinformatics databases. Chemical Methods OntologyCHMO An ontology for the methods used in chemical experiments. Clinical LABoratory OntologyLABO An ontology of prescriptions and reports in clinical laboratories. Clinical measurement ontology CMO Ontology to classify clinical measurements of experimental animals. Common Anatomy Reference Ontology CARO An ontology to improve interoperability between anatomy ontologies for different organisms. Comparative Data Analysis Ontology CDAO Ontology of concepts and relations relevant to evolutionary comparative analysis, such as phylogenetic trees. Confidence Information Ontology CIO An ontology to describe confidence information in sequence annotations. Contributor Role OntologyCRO An ontology for the diverse roles behind a scientific research article. Ctenophore OntologyCTENO An anatomical and developmental ontology for ctenophores (Comb Jellies). Dictyostelium discoideum anatomyDDANAT A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum. Dictyostelium discoideum phenotype ontologyDDPHENO An ontology for phenotypes of the slime-mould Dictyostelium discoideum. Drosophila developmentFBDV An ontology of the development of Drosophila melanogaster. Drosophila gross anatomyFBBT An ontology for the anatomy of Drosophila melanogaster. Drosophila Phenotype OntologyFBCV An ontology of common Drosophila phenotypes. Drug-drug Interaction and Drug-drug Interaction Evidence Ontology DIDEO Ontology for drug–drug interaction evidence. Evidence & Conclusion OntologyECO An ontology for types evidence used to support scientific claims.eagle-i resource ontologyERO An ontology of research equipment, protocols and consumables. Emotion Ontology MFOEM An ontology of emotions, moods, and other kinds of feelings. Environment Ontology ENVO Ontology of environmental features and habitats. Experimental condition ontology XCO An ontology for the different conditions in which experimental measurements are taken. Exposure Ontology EXOOntology to describe exposure to environmental factors (such as cigarette smoke) that might influence clinical outcomes.Fission Yeast Phenotype OntologyFYPO An ontology of phenotypes of fission yeast. Flora Phenotype Ontology FLOPO An ontology for traits and phenotypes of flowering plants. FlyBase Controlled VocabularyFBCV An ontology to support the FlyBase project. Food Ontology FOODON An ontology to represent entities that play a food role or related to foods.Foundational Model of Anatomy Ontology (subset)FMAO Subset of the Foundational Model of Anatomy Ontology. Fungal Anatomy OntologyFAO An ontology for the anatomy of fungi. GazetteerGAZ An ontology that acts as a gazetteer (geographical dictionary). Gene OntologyGO An ontology for describing the function of genes and gene products. Genomic Epidemiology Ontology GENEPIO An ontology for foodborne pathogens and associated outbreaks. Genotype OntologyGENO An ontology for genotypes and their related phenotypes and diseases. Geographical Entity OntologyGEO An ontology of geographical entities. Glycan Naming Ontology GNOME An ontology for glycans based on GlyTouCan. Homology Ontology HOM An ontology for concepts related to homology. Human Ancestry Ontology HANCESTRO An ontology of ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies. Human Developmental StagesHSAPDV An ontology of stages of the human life. Human Disease OntologyDO An ontology for describing human diseases. Human Phenotype OntologyHPO An ontology for human phenotypes in hereditary and non-hereditary diseases. HUPO-PSI cross-linking and derivatization reagents controlled vocabularyPSI-MS An ontology for reagents used to cross-link molecules in mass spectrometry experiments. Hymenoptera Anatomy Ontology HAO An ontology of the anatomy of the Hymenoptera (bees, wasps, and ants). Hypertension OntologyHTN An ontology for clinical data about hypertension. Infectious Disease Ontology IDO A set of ontologies related to infectious diseases. Information Artifact Ontology IAO An ontology of information entities. Informed Consent OntologyICO An ontology for concepts related to informed consent, such as forms and policies. Integrative and Conjugative Element OntologyICEO An ontology of bacterial integrative and conjugative elements (ICEs). Interaction Network Ontology INO An ontology for gene-gene interactions. Malaria Ontology IDOMAL An ontology for concepts related to malaria. Mammalian Feeding Muscle OntologyMFMO An ontology for the mammalian muscles that play a role in feeding behavior. Mammalian Phenotype OntologyMP Standard terms for annotating mammalian phenotypic data. Mass spectrometry ontologyMI An ontology for concepts to describe mass spectrometry in the context of proteomics. Measurement method ontologyMMO An ontology for methods of clinical and laboratory measurements. Medaka Developmental StagesOlatDv An ontology of life stages for the medaka fish. Mental Disease Ontology MFOMD An ontology for mental diseases. Mental Functioning Ontology MFO An ontology for concepts related to mental functioning. MHC Restriction Ontology MRO An ontology for Major Histocompatibility Complex (MHC) restriction in experiments. MIAPA Ontology MIAPA An ontology for phylogenetic data. Microbial Conditions Ontology MCO An ontology for microbial growth conditions. Minimum PDDI Information OntologyMPIO An ontology of the minimum information to describe drug–drug interactions. Molecular Interactions Controlled VocabularyMI An ontology for concepts related to the study of protein-protein interactions. Mondo Disease OntologyMONDO An ontology for the integration of information on disease.Mosquito gross anatomy ontology (VectorBase)TGMA An ontology for the anatomy of mosquitoes. Mouse adult gross anatomy ontologyEMAPA An ontology for the adult anatomy of the mouse (Mus). Mouse Developmental StagesMmusDv An ontology of stages of the mouse (Mus) life. Mouse gross anatomy and development, timedEMAP Ontology of anatomical structures of the mouse (Mus musculus). Mouse Pathology Ontology MPATH An ontology of mouse pathology phenotypes.Name Reaction OntologyRXNO An ontology for organic reactions in organic synthesis. NCBI organismal classification NCBITaxon An ontology representation of the NCBI organismal taxonomy. Neuro Behavior OntologyNBO An ontology of behavioral phenotypes of animals. NOMEN - A nomenclatural ontology for biological names NOMEN An ontology of the rules of nomenclature for biological names. Non-Coding RNA Ontology NCRO An ontology for non-coding RNA function. Ontologized MIABISOMIABIS An ontological version of MIABIS (Minimum Information About BIobank data Sharing). Ontology for Biobanking OBIB An ontology for concepts related to biobanks. Ontology for Biomedical InvestigationsOBI An ontology which describes biological processes, cellular components and molecular functions in living organisms. Ontology for General Medical ScienceOGMS An ontology for general aspects of medicine, with a focus on cancer. Ontology for Parasite LifeCycle OPL A reference ontology for parasite life cycle stages. Ontology of Adverse Events OAE An ontology for adverse events of drug regimens. Ontology of Arthropod Circulatory Systems OARCS An ontology for the circulatory systems of arthropods. Ontology of Biological and Clinical Statistics OBCS An ontology to describe statistical tools and methods used in biomedical investigation. Ontology of Biological AttributesOBA An ontology for biological traits. Ontology of Medically Related Social Entities OMRSE An ontology for entities (roles and organizations) related to healthcare. Ontology of Microbial Phenotypes OMP An ontology of phenotypes of microorganisms. Ontology of Organizational Structures of Trauma centers and Trauma systemsOOSTT An ontology for the organizational structures of trauma centers and trauma systems. Ontology of Precision Medicine and InvestigationOPMI An ontology for concepts related to precision medicine. Ontology of Prokaryotic Phenotypic and Metabolic Characters MICRO An ontology of prokaryotic phenotypic and metabolic characters. Ontology of RNA SequencingORNASEQ An ontology to annotate RNA Sequencing experiments. Ontology of Vaccine Adverse Events OVAE An ontology for adverse events of vaccines. Pathogen Host Interaction Phenotype OntologyPHIPO An ontology of phenotypes that occur in pathogen-host interactions. Pathogen Transmission OntologyTRANS An ontology for disease transmission processes. Pathway ontologyPW An ontology for annotating gene products to pathways. Performance Summary Display OntologyPSDO An ontology for concepts related to performance information for teams and organizations. Phenotype And Trait OntologyFOBI FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data. Planaria OntologyPLANA An ontology for the anatomy and developmental stages of the planaria (Schmidtea mediterranea). Planarian Phenotype OntologyPLANP An ontology for phenotypes of the planaria (Schmidtea mediterranea). Plant Experimental Conditions OntologyPECO An ontology for concepts related to plant biology experiments. Plant ontologyPO An ontology and database resource that links plant traits to genomics data. Plant Phenology OntologyPPO An ontology for describing the cyclic phenomena of plants. Plant Trait OntologyTO An ontology for phenotypic traits in plants. Platynereis Developmental StagesPDUMDV An ontology for life stages of the annelid Platynereis dumerilii. Population and Community OntologyPCO An ontology for describing groups of interacting organisms. Porifera Ontology PORO An ontology for the anatomy of sponges (Porifera) Protein modification MOD An ontology for protein chemical modifications. Protein Ontology PRO An ontological representation of protein-related entities. Rat Strain Ontology RS An ontology for laboratorial rat strains. Relation Ontology RO An ontology for relations betwe